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Amino terminal sequencing is carried out on an Applied
Biosystems sequencer equipped with an on-line HPLC system. The limit
of detection is 10 pmol of an individual phenythiohydantoin amino acid.100
pmol is usually sufficient to sequence from 5 to 25 residues - with
the quality of the data increasing with the amount of sample. The maximum
sample load is about 200 pmol. Samples should be submitted on PVDF membranes
(less than 15 mm2) or in less than 0.1 ml of a volatile solvent such
as water, 5 mM ammonium bicarbonate, 0.05% trifluoroacetic acid (TFA),
or 50% acetonitrile/0.05% TFA. Samples may contain small amounts of
SDS (less than the equivalent of 0.1 ml of 0.01% SDS). After blotting
samples onto PVDF, they should be stained with Coomassie Blue (silver
stains may not be used) and then destained extensively with at least
4 changes of destaining solvent followed by a final wash with ultrapure
water to lower the very high concentrations of Tris, glycine and other
gel and transfer buffers that otherwise will interfere with sequencing.
Please note that samples in SDS polyacrylamide gels may not be directly
loaded onto our Protein/Peptide Sequencers. The cycle charges for amino
acid sequencing include HPLC identification of the resulting PTH-amino
acids and a summary table of the estimated PTH-amino acid yields. There
is a minimum 5 cycle charge for samples which fail to sequence or which
contain less than 5 amino acids. On extended sequencer runs only those
cycles that are requested and for which a reasonable identification
can be made will be subject to charge. The resulting sequence also will
be searched via the National Center for Biological Information's databases
(i.e., BLAST search of the nr database) at no additional charge. In
those instances when a BLAST search does not identify the protein, an
additional search will be carried out the EST database
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